cellmapper.CellMapper
=====================

.. currentmodule:: cellmapper

.. add toctree option to make autodoc generate the pages

.. autoclass:: CellMapper



Attributes table
~~~~~~~~~~~~~~~~

.. autosummary::

    ~CellMapper.mapping_operator
    ~CellMapper.query_imputed





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~CellMapper.compute_fast_cca
    ~CellMapper.compute_joint_pca
    ~CellMapper.compute_mapping_matrix
    ~CellMapper.compute_neighbors
    ~CellMapper.compute_presence_score
    ~CellMapper.evaluate_expression_transfer
    ~CellMapper.evaluate_label_transfer
    ~CellMapper.load_precomputed_distances
    ~CellMapper.map
    ~CellMapper.map_layers
    ~CellMapper.map_obs
    ~CellMapper.map_obsm
    ~CellMapper.plot_confusion_matrix
    ~CellMapper.process_presence_scores
    ~CellMapper.register_external_predictions





Attributes
~~~~~~~~~~



.. autoattribute:: CellMapper.mapping_operator

.. autoattribute:: CellMapper.query_imputed






Methods
~~~~~~~



.. automethod:: CellMapper.compute_fast_cca

.. automethod:: CellMapper.compute_joint_pca

.. automethod:: CellMapper.compute_mapping_matrix

.. automethod:: CellMapper.compute_neighbors

.. automethod:: CellMapper.compute_presence_score

.. automethod:: CellMapper.evaluate_expression_transfer

.. automethod:: CellMapper.evaluate_label_transfer

.. automethod:: CellMapper.load_precomputed_distances

.. automethod:: CellMapper.map

.. automethod:: CellMapper.map_layers

.. automethod:: CellMapper.map_obs

.. automethod:: CellMapper.map_obsm

.. automethod:: CellMapper.plot_confusion_matrix

.. automethod:: CellMapper.process_presence_scores

.. automethod:: CellMapper.register_external_predictions